RNAlib-2.1.9
File List
Here is a list of all documented files with brief descriptions:
[detail level 12]
o-H
|o*2Dfold.h
|o*2Dpfold.h
|o*ali_plex.h
|o*alifold.hCompute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments
|o*aln_util.h
|o*cofold.hMFE version of cofolding routines
|o*convert_epars.hFunctions and definitions for energy parameter file format conversion
|o*data_structures.hAll datastructures and typedefs shared among the Vienna RNA Package can be found here
|o*dist_vars.hGlobal variables for Distance-Package
|o*duplex.hDuplex folding function declarations..
|o*edit_cost.hGlobal variables for Edit Costs included by treedist.c and stringdist.c
|o*energy_const.h
|o*energy_par.h
|o*findpath.hCompute direct refolding paths between two secondary structures
|o*fold.hMFE calculations and energy evaluations for single RNA sequences
|o*fold_vars.hHere all all declarations of the global variables used throughout RNAlib
|o*gquad.hVarious functions related to G-quadruplex computations
|o*inverse.hInverse folding routines
|o*Lfold.hPredicting local MFE structures of large sequences
|o*loop_energies.hEnergy evaluation for MFE and partition function calculations
|o*LPfold.hFunction declarations of partition function variants of the Lfold algorithm
|o*MEA.hComputes a MEA (maximum expected accuracy) structure
|o*mm.hSeveral Maximum Matching implementations
|o*move_set.h
|o*naview.h
|o*pair_mat.h
|o*params.h
|o*part_func.hPartition function of single RNA sequences
|o*part_func_co.hPartition function for two RNA sequences
|o*part_func_up.hPartition Function Cofolding as stepwise process
|o*PKplex.h
|o*plex.h
|o*plot_layouts.hSecondary structure plot layout algorithms
|o*ProfileAln.h
|o*profiledist.h
|o*PS_dot.hVarious functions for plotting RNA secondary structures, dot-plots and other visualizations
|o*read_epars.h
|o*ribo.h
|o*RNAstruct.hParsing and Coarse Graining of Structures
|o*snofold.h
|o*snoop.h
|o*stringdist.hFunctions for String Alignment
|o*subopt.hRNAsubopt and density of states declarations
|o*svm_utils.h
|o*treedist.hFunctions for Tree Edit Distances
|\*utils.hVarious utility- and helper-functions used throughout the Vienna RNA package
o-lib
|o*1.8.4_epars.hFree energy parameters for parameter file conversion
|o*1.8.4_intloops.hFree energy parameters for interior loop contributions needed by the parameter file conversion functions
|o*intl11.h
|o*intl11dH.h
|o*intl21.h
|o*intl21dH.h
|o*intl22.h
|o*intl22dH.h
|\*list.h
\*mainpage.h