subopt.h File Reference

RNAsubopt and density of states declarations. More...

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Functions
SOLUTION *	subopt (char *seq, char *structure, int delta, FILE *fp)
	Returns list of subopt structures or writes to fp. More...
SOLUTION *	subopt_par (char *seq, char *structure, paramT *parameters, int delta, int is_constrained, int is_circular, FILE *fp)
	Returns list of subopt structures or writes to fp.
SOLUTION *	subopt_circ (char *seq, char *sequence, int delta, FILE *fp)
	Returns list of circular subopt structures or writes to fp. More...

Variables
int	subopt_sorted
	Sort output by energy.
double	print_energy
	printing threshold for use with logML
int	density_of_states [MAXDOS+1]
	The Density of States. More...

Detailed Description

RNAsubopt and density of states declarations.