data_structures.h File Reference
All datastructures and typedefs shared among the Vienna RNA Package can be found here. More...
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Data Structures | |
| struct | plist |
| this datastructure is used as input parameter in functions of PS_dot.h and others More... | |
| struct | cpair |
| this datastructure is used as input parameter in functions of PS_dot.c More... | |
| struct | COORDINATE |
| this is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE More... | |
| struct | sect |
| Stack of partial structures for backtracking. More... | |
| struct | bondT |
| Base pair. More... | |
| struct | bondTEn |
| Base pair with associated energy. More... | |
| struct | model_detailsT |
| The data structure that contains the complete model details used throughout the calculations. More... | |
| struct | paramT |
| The datastructure that contains temperature scaled energy parameters. More... | |
| struct | pf_paramT |
| The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. More... | |
| struct | PAIR |
| Base pair data structure used in subopt.c. More... | |
| struct | INTERVAL |
| Sequence interval stack element used in subopt.c. More... | |
| struct | SOLUTION |
| Solution element from subopt.c. More... | |
| struct | cofoldF |
| struct | ConcEnt |
| struct | pairpro |
| struct | pair_info |
| A base pair info structure. More... | |
| struct | move_t |
| struct | intermediate_t |
| struct | path_t |
| struct | pu_contrib |
| contributions to p_u More... | |
| struct | interact |
| struct | pu_out |
| Collection of all free_energy of beeing unpaired values for output. More... | |
| struct | constrain |
| constraints for cofolding More... | |
| struct | duplexT |
| struct | folden |
| struct | snoopT |
| struct | dupVar |
| struct | TwoDfold_solution |
| Solution element returned from TwoDfoldList. More... | |
| struct | TwoDfold_vars |
| Variables compound for 2Dfold MFE folding. More... | |
| struct | TwoDpfold_solution |
| Solution element returned from TwoDpfoldList. More... | |
| struct | TwoDpfold_vars |
| Variables compound for 2Dfold partition function folding. More... | |
Macros | |
| #define | MAXALPHA 20 |
| Maximal length of alphabet. | |
| #define | MAXDOS 1000 |
| Maximum density of states discretization for subopt. | |
Detailed Description
All datastructures and typedefs shared among the Vienna RNA Package can be found here.
