RNAlib-2.1.9
svm_utils.h
1 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
2 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__
3 
4 typedef struct svm_model{
5  struct svm_parameter param;
6  int nr_class;
7  int l;
8  struct svm_node **SV;
9  double **sv_coef;
10  double *rho;
11  double *probA;
12  double *probB;
13  int *label;
14  int *nSV;
15  int free_sv;
16 } svm_model;
17 
18 extern char *avg_model_string;
19 extern char *sd_model_string;
20 
21 float get_z(char *sequence,
22  double energy);
23 double avg_regression (int N,
24  int A,
25  int C,
26  int G,
27  int T,
28  struct svm_model *avg_model,
29  int *info );
30 double sd_regression (int N,
31  int A,
32  int C,
33  int G,
34  int T,
35  struct svm_model *sd_model);
36 double minimal_sd (int N,
37  int A,
38  int C,
39  int G,
40  int T);
41 svm_model *svm_load_model_string(char *modelString);
42 int *get_seq_composition( short *S,
43  unsigned int start,
44  unsigned int stop);
45 
46 #endif