H Directory Reference
Directory dependency graph for H:
Files | |
| file | 2Dfold.h [code] |
| file | 2Dpfold.h [code] |
| file | ali_plex.h [code] |
| file | alifold.h [code] |
| compute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments | |
| file | aln_util.h [code] |
| file | cofold.h [code] |
| MFE version of cofolding routines. | |
| file | convert_epars.h [code] |
| Functions and definitions for energy parameter file format conversion. | |
| file | data_structures.h [code] |
| All datastructures and typedefs shared among the Vienna RNA Package can be found here. | |
| file | dist_vars.h [code] |
| Global variables for Distance-Package. | |
| file | duplex.h [code] |
| Duplex folding function declarations... | |
| file | edit_cost.h [code] |
| global variables for Edit Costs included by treedist.c and stringdist.c | |
| file | energy_const.h [code] |
| file | energy_par.h [code] |
| file | findpath.h [code] |
| Compute direct refolding paths between two secondary structures. | |
| file | fold.h [code] |
| MFE calculations and energy evaluations for single RNA sequences. | |
| file | fold_vars.h [code] |
| Here all all declarations of the global variables used throughout RNAlib. | |
| file | gquad.h [code] |
| Various functions related to G-quadruplex computations. | |
| file | inverse.h [code] |
| Inverse folding routines. | |
| file | Lfold.h [code] |
| Predicting local MFE structures of large sequences. | |
| file | loop_energies.h [code] |
| Energy evaluation for MFE and partition function calculations. | |
| file | LPfold.h [code] |
| Function declarations of partition function variants of the Lfold algorithm. | |
| file | MEA.h [code] |
| Computes a MEA (maximum expected accuracy) structure. | |
| file | mm.h [code] |
| Several Maximum Matching implementations. | |
| file | move_set.h [code] |
| file | naview.h [code] |
| file | pair_mat.h [code] |
| file | params.h [code] |
| file | part_func.h [code] |
| Partition function of single RNA sequences. | |
| file | part_func_co.h [code] |
| Partition function for two RNA sequences. | |
| file | part_func_up.h [code] |
| Partition Function Cofolding as stepwise process. | |
| file | PKplex.h [code] |
| file | plex.h [code] |
| file | plot_layouts.h [code] |
| Secondary structure plot layout algorithms. | |
| file | ProfileAln.h [code] |
| file | profiledist.h [code] |
| file | PS_dot.h [code] |
| Various functions for plotting RNA secondary structures, dot-plots and other visualizations. | |
| file | read_epars.h [code] |
| file | ribo.h [code] |
| file | RNAstruct.h [code] |
| Parsing and Coarse Graining of Structures. | |
| file | snofold.h [code] |
| file | snoop.h [code] |
| file | stringdist.h [code] |
| Functions for String Alignment. | |
| file | subopt.h [code] |
| RNAsubopt and density of states declarations. | |
| file | svm_utils.h [code] |
| file | treedist.h [code] |
| Functions for Tree Edit Distances. | |
| file | utils.h [code] |
| Various utility- and helper-functions used throughout the Vienna RNA package. | |
