2Dpfold.h File Reference

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Functions
TwoDpfold_vars *	get_TwoDpfold_variables (const char *seq, const char *structure1, char *structure2, int circ)
	Get a datastructure containing all necessary attributes and global folding switches. More...
TwoDpfold_vars *	get_TwoDpfold_variables_from_MFE (TwoDfold_vars *mfe_vars)
	Get the datastructure containing all necessary attributes and global folding switches from a pre-filled mfe-datastructure. More...
void	destroy_TwoDpfold_variables (TwoDpfold_vars *vars)
	Free all memory occupied by a TwoDpfold_vars datastructure. More...
TwoDpfold_solution *	TwoDpfoldList (TwoDpfold_vars *vars, int maxDistance1, int maxDistance2)
	Compute the partition function for all distance classes. More...
char *	TwoDpfold_pbacktrack (TwoDpfold_vars *vars, int d1, int d2)
	Sample secondary structure representatives from a set of distance classes according to their Boltzmann probability. More...
char *	TwoDpfold_pbacktrack5 (TwoDpfold_vars *vars, int d1, int d2, unsigned int length)
	Sample secondary structure representatives with a specified length from a set of distance classes according to their Boltzmann probability. More...