energy_const.h

Go to the documentation of this file.

#ifndef __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__
#define __VIENNA_RNA_PACKAGE_ENERGY_CONST_H__

#include <limits.h>

#define GASCONST 1.98717  /* in [cal/K] */

#define K0  273.15

#define INF 10000000 /* (INT_MAX/10) */

#define EMAX (INF/10)

#define FORBIDDEN 9999

#define BONUS 10000

#define NBPAIRS 7

#define TURN 3

#define MAXLOOP 30

#define   VRNA_GQUAD_MISMATCH_PENALTY   300   /* penalty for incompatible nucleotides in an alignment that destruct a gquad layer */
#define   VRNA_GQUAD_MISMATCH_NUM_ALI   1   /* maximum number of mismatching sequences in the alignment when gquad should be formed */

#endif