profiledist.h

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#ifndef __VIENNA_RNA_PACKAGE_PROFILEDIST_H__
#define __VIENNA_RNA_PACKAGE_PROFILEDIST_H__

#ifdef __GNUC__
#define DEPRECATED(func) func __attribute__ ((deprecated))
#else
#define DEPRECATED(func) func
#endif

#include "data_structures.h"

float profile_edit_distance(const float *T1,
                            const float *T2);

float *Make_bp_profile_bppm(FLT_OR_DBL *bppm,
                            int length);

void  print_bppm(const float *T);

void  free_profile(float *T);

DEPRECATED(float *Make_bp_profile(int length));

#endif