Data Structures

Here are the data structures with brief descriptions:

bondT	Base pair
bondTEn	Base pair with associated energy
cofoldF
ConcEnt
constrain	Constraints for cofolding
COORDINATE	This is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE
cpair	This datastructure is used as input parameter in functions of PS_dot.c
duplexT
dupVar
folden
interact
intermediate_t
INTERVAL	Sequence interval stack element used in subopt.c
LIST
LST_BUCKET
model_detailsT	The data structure that contains the complete model details used throughout the calculations
move_t
PAIR	Base pair data structure used in subopt.c
pair_info	A base pair info structure
pairpro
paramT	The datastructure that contains temperature scaled energy parameters
path_t
pf_paramT	The datastructure that contains temperature scaled Boltzmann weights of the energy parameters
plist	This datastructure is used as input parameter in functions of PS_dot.h and others
Postorder_list
pu_contrib	Contributions to p_u
pu_out	Collection of all free_energy of beeing unpaired values for output
sect	Stack of partial structures for backtracking
snoopT
SOLUTION	Solution element from subopt.c
struct_en
svm_model
swString
Tree
TwoDfold_solution	Solution element returned from TwoDfoldList
TwoDfold_vars	Variables compound for 2Dfold MFE folding
TwoDpfold_solution	Solution element returned from TwoDpfoldList
TwoDpfold_vars	Variables compound for 2Dfold partition function folding