fold_vars.h

Go to the documentation of this file.

#ifndef __VIENNA_RNA_PACKAGE_FOLD_VARS_H__
#define __VIENNA_RNA_PACKAGE_FOLD_VARS_H__

#include "data_structures.h"

#define PUBLIC
#define PRIVATE static

extern int    fold_constrained;

extern int    noLonelyPairs;

extern int  dangles;

extern int  noGU;

extern int  no_closingGU;

extern int  tetra_loop;

extern int  energy_set;

extern int  circ;

extern int  csv;

extern int oldAliEn;
extern int ribo;            

extern char *RibosumFile;   

extern char *nonstandards;

extern double temperature;

extern int  james_rule;

extern int  logML;

extern int  cut_point;

extern bondT  *base_pair;

extern FLT_OR_DBL *pr;

extern int   *iindx;

extern double pf_scale;

extern int    do_backtrack;

extern char backtrack_type;

extern int gquad;

extern int canonicalBPonly;

char * option_string(void);

void set_model_details(model_detailsT *md);

#endif