RNAlib-2.1.9
PS_dot.h
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1 #ifndef __VIENNA_RNA_PACKAGE_PS_DOT_H__
2 #define __VIENNA_RNA_PACKAGE_PS_DOT_H__
3 
4 #include "data_structures.h"
5 #include "plot_layouts.h"
6 
7 #ifdef __GNUC__
8 #define DEPRECATED(func) func __attribute__ ((deprecated))
9 #else
10 #define DEPRECATED(func) func
11 #endif
12 
19 /* write PostScript drawing of structure to file with annotation */
20 int PS_rna_plot_snoop_a(char *string,
21  char *structure,
22  char *ssfile,
23  int *relative_access,
24  const char *seqs[]);
25 
38 int PS_rna_plot(char *string,
39  char *structure,
40  char *file);
41 
60 int PS_rna_plot_a(char *string,
61  char *structure,
62  char *file,
63  char *pre,
64  char *post);
65 
66 int PS_rna_plot_a_gquad(char *string,
67  char *structure,
68  char *ssfile,
69  char *pre,
70  char *post);
71 
84 int gmlRNA( char *string,
85  char *structure,
86  char *ssfile,
87  char option);
88 
99 int ssv_rna_plot( char *string,
100  char *structure,
101  char *ssfile);
102 
111 int svg_rna_plot( char *string,
112  char *structure,
113  char *ssfile);
114 
123 int xrna_plot(char *string,
124  char *structure,
125  char *ssfile);
126 
127 int PS_color_dot_plot(char *string,
128  cpair *pi,
129  char *filename);
130 
131 int PS_color_dot_plot_turn( char *seq,
132  cpair *pi,
133  char *filename,
134  int winSize);
135 
155 int PS_dot_plot_list( char *seq,
156  char *filename,
157  plist *pl,
158  plist *mf,
159  char *comment);
160 
161 int PS_dot_plot_turn( char *seq,
162  struct plist *pl,
163  char *filename,
164  int winSize);
165 
166 int PS_color_aln( const char *structure,
167  const char *filename,
168  const char *seqs[],
169  const char *names[]);
170 
174 int aliPS_color_aln(const char *structure,
175  const char *filename,
176  const char *seqs[],
177  const char *names[]);
178 
179 
195 DEPRECATED(int PS_dot_plot( char *string,
196  char *file));
197 #endif