params.h

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#ifndef __VIENNA_RNA_PACKAGE_PARAMS_H__
#define __VIENNA_RNA_PACKAGE_PARAMS_H__

#include "energy_const.h"
#include "data_structures.h"

#ifdef __GNUC__
#define DEPRECATED(func) func __attribute__ ((deprecated))
#else
#define DEPRECATED(func) func
#endif

paramT *scale_parameters(void);

paramT *get_scaled_parameters(double temperature,
                              model_detailsT md);

paramT *get_parameter_copy(paramT *par);

pf_paramT *get_scaled_pf_parameters(void);

pf_paramT *get_boltzmann_factors( double temperature,
                                  double betaScale,
                                  model_detailsT md,
                                  double pf_scale);

pf_paramT *get_boltzmann_factor_copy(pf_paramT *parameters);

pf_paramT *get_scaled_alipf_parameters(unsigned int n_seq);

PUBLIC pf_paramT *get_boltzmann_factors_ali(unsigned int n_seq,
                                            double temperature,
                                            double betaScale,
                                            model_detailsT md,
                                            double pf_scale);

DEPRECATED(paramT     *copy_parameters(void));
DEPRECATED(paramT     *set_parameters(paramT *dest));
DEPRECATED(pf_paramT  *scale_pf_parameters(void));
DEPRECATED(pf_paramT  *copy_pf_param(void));
DEPRECATED(pf_paramT  *set_pf_param(paramT *dest));



#endif