The data structure that contains the complete model details used throughout the calculations. More...

Data Fields
int	dangles
	Specifies the dangle model used in any energy evaluation (0,1,2 or 3) More...

int	special_hp
	Include special hairpin contributions for tri, tetra and hexaloops.

int	noLP
	Only consider canonical structures, i.e. no 'lonely' base pairs.

int	noGU
	Do not allow GU pairs.

int	noGUclosure
	Do not allow loops to be closed by GU pair.

int	logML
	Use logarithmic scaling for multi loops.

int	circ
	Assume molecule to be circular.

int	gquad
	Include G-quadruplexes in structure prediction.

int	canonicalBPonly
	remove non-canonical bp's from constraint structures

Detailed Description

The data structure that contains the complete model details used throughout the calculations.

Field Documentation

int model_detailsT::dangles

Specifies the dangle model used in any energy evaluation (0,1,2 or 3)

Note: Some function do not implement all dangle model but only a subset of (0,1,2,3). Read the documentaion of the particular recurrences or energy evaluation function for information about the provided dangle model.

The documentation for this struct was generated from the following file: