Variables compound for 2Dfold MFE folding. More...

Collaboration diagram for TwoDfold_vars:

Data Fields
paramT *	P
	Precomputed energy parameters and model details.

int	do_backtrack
	Flag whether to do backtracing of the structure(s) or not.

char *	ptype
	Precomputed array of pair types.

char *	sequence
	The input sequence.

short *	S1
	The input sequences in numeric form.

unsigned int	maxD1
	Maximum allowed base pair distance to first reference.

unsigned int	maxD2
	Maximum allowed base pair distance to second reference.

unsigned int *	mm1
	Maximum matching matrix, reference struct 1 disallowed.

unsigned int *	mm2
	Maximum matching matrix, reference struct 2 disallowed.

int *	my_iindx
	Index for moving in quadratic distancy dimensions.

unsigned int *	referenceBPs1
	Matrix containing number of basepairs of reference structure1 in interval [i,j].

unsigned int *	referenceBPs2
	Matrix containing number of basepairs of reference structure2 in interval [i,j].

unsigned int *	bpdist
	Matrix containing base pair distance of reference structure 1 and 2 on interval [i,j].

Detailed Description

Variables compound for 2Dfold MFE folding.

See Also: get_TwoDfold_variables(), destroy_TwoDfold_variables(), TwoDfoldList()

The documentation for this struct was generated from the following file:

Data Fields