RNAlib-2.1.9
Data Fields
pair_info Struct Reference

A base pair info structure. More...

Data Fields

unsigned i
 nucleotide position i
 
unsigned j
 nucleotide position j
 
float p
 Probability.
 
float ent
 Pseudo entropy for $ p(i,j) = S_i + S_j - p_ij*ln(p_ij) $.
 
short bp [8]
 Frequencies of pair_types.
 
char comp
 1 iff pair is in mfe structure
 

Detailed Description

A base pair info structure.

For each base pair (i,j) with i,j in [0, n-1] the structure lists:

  • its probability 'p'
  • an entropy-like measure for its well-definedness 'ent'
  • the frequency of each type of pair in 'bp[]'
    • 'bp[0]' contains the number of non-compatible sequences
    • 'bp[1]' the number of CG pairs, etc.
The documentation for this struct was generated from the following file: