Local MFE structure Prediction and Z-scores

Collaboration diagram for Local MFE structure Prediction and Z-scores:

Functions
float	Lfold (const char *string, char *structure, int maxdist)
	The local analog to fold(). More...
float	Lfoldz (const char *string, char *structure, int maxdist, int zsc, double min_z)

Detailed Description

Function Documentation

float Lfold	(	const char *	string,
		char *	structure,
		int	maxdist
	)

The local analog to fold().

Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'

Parameters

string
structure
maxdist

float Lfoldz	(	const char *	string,
		char *	structure,
		int	maxdist,
		int	zsc,
		double	min_z
	)

Parameters

string
structure
maxdist
zsc
min_z