Predicting Locally stable structures of large sequences

Collaboration diagram for Predicting Locally stable structures of large sequences:

Modules
	Local MFE structure Prediction and Z-scores
	Partition functions for locally stable secondary structures
	Local MFE consensus structures for Sequence Alignments

Files
file	Lfold.h
	Predicting local MFE structures of large sequences.

Detailed Description

Local structures can be predicted by a modified version of the fold() algorithm that restricts the span of all base pairs.