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Supplementary files

s1.xls---Predicted motifs and comparison with PLACE motifs
s2.txt---Predicted motif combinations
s3.xls---Predicted motif combinations consistent with known TF combinations
s4.xls---Motif Combinations whose target genes were significantly (*fdr=0.05) co-expressed
s5.xls---Ortholgous gene pairs
s6.xls---GEO Gene expression datasets and Co-expressed clusters

Software (Linux)

MERCED (Linux)

This material is based upon work supported by the National Science Foundation under Grant No. CBET1125676. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF)