Suboptimal structures according to Zuker et al. 1989

Collaboration diagram for Suboptimal structures according to Zuker et al. 1989:

Functions
SOLUTION *	zukersubopt (const char *string)
	Compute Zuker type suboptimal structures. More...
SOLUTION *	zukersubopt_par (const char *string, paramT *parameters)
	Compute Zuker type suboptimal structures.

Detailed Description

Function Documentation

SOLUTION* zukersubopt

(

const char *

string

)

Compute Zuker type suboptimal structures.

Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.

Parameters

string

RNA sequence

Returns

List of zuker suboptimal structures