RNAlib-2.1.9
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RNAlib-2.1.9
ViennaRNA Package core - RNAlib
Parsing and Comparing - Functions to Manipulate Structures
Utilities - Odds and Ends
Example - A Small Example Program
Deprecated List
Bibliographic References
Modules
RNA Secondary Structure Folding
Calculating Minimum Free Energy (MFE) Structures
Calculating Partition Functions and Pair Probabilities
Enumerating Suboptimal Structures
Calculate Secondary Structures of two RNAs upon Dimerization
Predicting Consensus Structures from Alignment(s)
Predicting Locally stable structures of large sequences
Change and Precalculate Energy Parameter Sets and Boltzmann Factors
Energy evaluation
Searching Sequences for Predefined Structures
Classified Dynamic Programming
Parsing and Comparing - Functions to Manipulate Structures
Data Structures
Files
Modules
Classified Dynamic Programming
RNA Secondary Structure Folding
Collaboration diagram for Classified Dynamic Programming:
Modules
Distance based partitioning of the Secondary Structure Space
Compute Thermodynamic properties for a Distance Class Partitioning of the Secondary Structure Space.
Compute the Density of States
Detailed Description
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