is the original distribution of SIOMICS
For the detailed description of SIOMICS 1.x, please refer to SIOMICS 1.2 manual
SIOMICS 1.4 manual
The following results were provided by SIOMICS 1.x
As mentioned in the SIOMICS 1.x manual
, there are :
- X.motifs file was the predicted motifs.
- X.mc file was the predicted motif modules, the significant motif combinations of the predicted motifs.
- X.motifs.JASPAR.pdf file was the comparison results between X.motifs and motif database JASPAR v2010
- X.motifs.TRANSFAC.pdf file was the comparison results between X.motifs and motif database TRANSFAC v11.3
- X.mc.sif file was the simple interaction format file based on X.mc, which can be visualized by cytocape.
- X.tfbs file was the TFBSs information file for the predicted motifs.
- running.log was the running parameters the users have specified and the time cost of this running.
Download SIOMICS 1.x
click here to download SIOMICS 1.x software
SIOMICS 1.0 running results
SIOMICS 2.0 predictions on 13 mESC TFs
Comparison of predicted motifs with known motifs