ChIPModule is a software tool for systematical discoveray of transcription factors and their cofactors from ChIP-seq data. Given a ChIP-seq dataset and motifs of a large number of transcription factors, ChIPModule can efficiently identify groups of motifs,whose instances significantly co-occur in the ChIP-seq peak regions. By discovering groups of co-occurring motifs, ChIPModule enables the systematic study of cofactors in ChIP-seq peak regions.

Windows version download, Unix version download, manual, result_E2F1, result_ESR1.

Citation Information of ChIPModule

Ding J, Cai X, Wang Y, Hu H, Li X. ChIPModule: Systematic discovery of transcription factors and their cofactors from ChIP-seq data, Pac Symp Biocomput. 2013.

Update log
Feb.27,2013 Tools used to generate your own PWMs file and Lambda file were provided.