Ying Wang's Site is Under Construction

ChIPModule is a software tool for systematical discoveray of transcription factors and their cofactors from ChIP-seq data. Given a ChIP-seq dataset and motifs of a large number of transcription factors, ChIPModule can efficiently identify groups of motifs,whose instances significantly co-occur in the ChIP-seq peak regions. By discovering groups of co-occurring motifs, ChIPModule enables the systematic study of cofactors in ChIP-seq peak regions.

Windows version download, Unix version download, manual, result_E2F1, result_ESR1.

Citation Information of ChIPModule

Ding J, Cai X, Wang Y, Hu H, Li X. ChIPModule: Systematic discovery of transcription factors and their cofactors from ChIP-seq data, Pac Symp Biocomput. 2013.

Update log
Feb.27,2013 Tools used to generate your own PWMs file and Lambda file were provided.

Yiyu Zheng's Site is Under Construction

Principal Investigator

Haiyan Nancy Hu

Current lab members:

Rony Chowdhury Ripan (Ph.D. student)

Matthew Weston (Ph.D. student)

Tasbiraha Athaya (Ph.D. student)

Marjorie Principato (M.S. student)

Alumni: 

Jonathann Fabien (URE student, 2024)

Bruno Fregoso Frias (URE student, 2024)

Hansi Zheng (Ph.D. 2022)

Saidi Wang (Ph.D. 2022)

Jack Teegarden (M.S. 2023)

Minerva Fatimae Ventolero (Ph.D. 2022, co-advise)

Amlan Talukder (Ph.D. 2021)

Xin Li (Ph.D. 2020)

Jun Ding (Ph.D. 2016)

Ying Wang (Ph.D. 2016)

Justin Wu (M.S. 2022)

Mingyu Cha (M.S. 2021)

Yiyu Zheng (M.S. 2019)

John Edison (M.S. 2013)

Bo Yang (M.S. 2013)